PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010087394.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 467aa    MW: 50930.9 Da    PI: 5.8262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010087394.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055342364123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+Cp C+ sF++   L  H++ H
  XP_010087394.1 342 YTCPECNASFRSGNALGGHMSAH 364
                     9****************999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.28E-5339369No hitNo description
PfamPF139121.4E-9341364IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.198342369IPR007087Zinc finger, C2H2
PROSITE patternPS000280344364IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAPMEKQVPE SDPQKYCEEW FTMANTTGKE FELPNISNSI AASSNNNIPT PNMITPSTNI  60
TQNFVSNSNP MNHVPNLINP HFANTQRHLL SHFPRPSPLR IRNHGNNIYL NGVQAMTSAI  120
YHNGDPLANN LSDGTNYPMG NDPFVPLDPS TFVVNPNRSM VYQQQIPTLP GPLSSGHTHL  180
RTTITQITEF HFLPNIGESS TFTTPTPISS FPTPNYGTPI PISAPSQFLD DHLSQVHQTL  240
ADLGDLGVIF PVPPLAVYRP NHFCPACNYD LSFPHPNFNP PGASADRAPQ RPRFNQCEYN  300
NIVNGRPIKQ EMNDNVVAGN YQAQAAAPVA PAPEEAQERR AYTCPECNAS FRSGNALGGH  360
MSAHARKRKR EMINRFERAA NPNPLPPEDC EMFAYIDAAI GINNNNVVDN MIRDVAAVAP  420
LLGDVLPAAA AAAAAAESIT IENPGELDEE FSSASSTTYM AGGKLKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010087394.10.0hypothetical protein L484_018420
TrEMBLW9QDA40.0W9QDA4_9R